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Resolve a writable, Docker-bind-mountable run root for calibration runs

growth_calibration_work_root.Rd

Mirrors the fire-calibration scratch root, with one extra constraint: the value is baked into the {targets} command at pipeline-definition time, so it must be STABLE across sessions. tempdir() is therefore not usable as the fallback – it would change every session and invalidate the run every time.

Usage

growth_calibration_work_root()

Value

Character path.

Details

Resolution order:

  1. LANDIS_GROWTH_SCRATCH, if set

  2. /mnt/scratch/<user>/<project>/landis-growth-calibration, when /mnt/scratch/<user> exists and is writable (the cluster convention)

  3. ~/.cache/landis-growth-calibration

The default of running in place is deliberately NOT used: in many deployments ./LANDIS-II/ is commonly a root-squashed NFS symlink, which Docker cannot bind-mount (the run dies with exit code 126). Staging on a local filesystem and letting tar_landis() archive the finished replicate back to the tracked scenario directory works on the workstation, the cluster, and a laptop alike.

See also

Other growth calibration helpers: extract_landscape_cohort_structures(), growth_add_objective(), growth_auto_window(), growth_best_candidates(), growth_bin_observations(), growth_calibration_design(), growth_calibration_partition(), growth_climatic_distance(), growth_climatic_weight(), growth_expand_over_pseudo_species(), growth_factorial_ratio_grid(), growth_fitting_windows(), growth_identifiability(), growth_inflation_factor(), growth_mortality_onset_frac(), growth_plot_palette(), growth_pseudo_species_name(), growth_reference_curves(), growth_reference_inflection(), growth_score_fit(), growth_scoring_for(), growth_smooth_observations(), growth_structure_cell_curves(), growth_structure_cohort_table(), growth_structure_design(), growth_structure_summary(), growth_window_for(), plot_growth_calibration(), plot_growth_candidate(), plot_growth_factorial_sensitivity(), plot_growth_structures(), read_growth_scoring(), read_landscape_cohort_structures(), scale_linetype_growth_reference(), write_growth_review_bundle()