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Build the calibration design table

growth_calibration_design.Rd

One row per landscape cell. landis_species is the (pseudo-)species name written into species.txt; species is the real modelled species it stands for.

Usage

growth_calibration_design(
  growth_params,
  grid = NULL,
  cohort_age = 1L,
  max_cells = 4000L
)

Arguments

growth_params

A data frame of the parameters currently in use, with columns species, growth_shp, mort_shp, anpp_max and biomass_max. Restrict it to the species being calibrated.

grid

Optional tibble with species and any of growth_shp, mort_shp, anpp_max, biomass_max giving the candidate values to sweep. One row per candidate value per parameter per species.

cohort_age

Integer. Age of the single planted cohort.

max_cells

Integer. Guard against an accidentally enormous factorial.

Value

A tibble with one row per cell.

Details

With grid = NULL this returns the Phase A verification design: one cell per species at its current calibrated parameters, which reproduces the original single-cell runs. Supply grid to expand a factorial.

See also

Other growth calibration helpers: extract_landscape_cohort_structures(), growth_add_objective(), growth_auto_window(), growth_best_candidates(), growth_bin_observations(), growth_calibration_partition(), growth_calibration_work_root(), growth_climatic_distance(), growth_climatic_weight(), growth_expand_over_pseudo_species(), growth_factorial_ratio_grid(), growth_fitting_windows(), growth_identifiability(), growth_inflation_factor(), growth_mortality_onset_frac(), growth_plot_palette(), growth_pseudo_species_name(), growth_reference_curves(), growth_reference_inflection(), growth_score_fit(), growth_scoring_for(), growth_smooth_observations(), growth_structure_cell_curves(), growth_structure_cohort_table(), growth_structure_design(), growth_structure_summary(), growth_window_for(), plot_growth_calibration(), plot_growth_candidate(), plot_growth_factorial_sensitivity(), plot_growth_structures(), read_growth_scoring(), read_landscape_cohort_structures(), scale_linetype_growth_reference(), write_growth_review_bundle()