Wildlife Habitat Output Extension

Wildlife Habitat Output Extension

References

LANDIS-II Output Wildlife Habitat v3 Extension User Guide https://github.com/LANDIS-II-Foundation/Extension-Output-Wildlife-Habitat/blob/master/docs/LANDIS-II%20Wildlife%20Habitat%20Output%20v3%20User%20Guide.pdf

See also

suitabilityFile() (also used by OutputLocalHabitat).

Other Wildlife Habitat Output helpers: insertSuitabilityFiles(), suitabilityFile()

Super class

LandisExtension -> OutputWildlifeHabitat

Active bindings

OutputTimestep

Integer. Output frequency (years); must be >= Timestep.

MapFileNames

Character. Output filename pattern; must contain {wildlifeName} and {timestep}.

SuitabilityFiles

List of SuitabilityFile objects, or a character vector of relative filenames (auto-wrapped).

Methods

Public methods

• OutputWildlifeHabitat$new()

• OutputWildlifeHabitat$write()

• OutputWildlifeHabitat$clone()

Inherited methods

• LandisExtension$add_file()

---

OutputWildlifeHabitat$new()

Usage

OutputWildlifeHabitat$new(
  path,
  Timestep = 1L,
  OutputTimestep = NULL,
  MapFileNames = NULL,
  SuitabilityFiles = list()
)

Arguments

path

Character. Directory path.

Timestep

Integer. Inner simulation interval (years).

OutputTimestep

Integer. Output frequency (years); must be >= Timestep.

MapFileNames

Character. Output filename pattern; must contain the literals {wildlifeName} and {timestep}.

SuitabilityFiles

List of SuitabilityFile sub-objects (see suitabilityFile()) or a character vector of filenames (auto-wrapped).

---

OutputWildlifeHabitat$write()

Write extension inputs to disk

Usage

OutputWildlifeHabitat$write()

---

OutputWildlifeHabitat$clone()

The objects of this class are cloneable with this method.

Usage

OutputWildlifeHabitat$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.