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Forest Carbon Succession (ForCS) Extension

ForCS.Rd

Forest Carbon Succession (ForCS) Extension

Forest Carbon Succession (ForCS) Extension

References

LANDIS-II Social-Climate-Fire v4 User Guide https://github.com/LANDIS-II-Foundation/Extension-Social-Climate-Fire/blob/master/docs/LANDIS-II%20Social-Climate-Fire%20v4%20User%20Guide.pdf

TODO

Super class

landisutils::LandisExtension -> ForC Succession

Active bindings

SeedingAlgorithm

Character. Dispersal algorithm to use. One of "WardSeedDispersal", "NoDispersal", "UniversalDispersal".

ClimateFile

Character. Relative file path.

InitialCommunitiesFiles

Character. Relative file paths.

DisturbanceMatrixFile

Character. Relative file path.

SnagFile

(Optional) Character. Relative file path.

OutputTables

data.frame.

SoilSpinupControls

data.frame.

AvailableLightBiomass

data.frame.

LightEstablishmentTable

data.frame.

SpeciesParameters

data.frame.

DOMPools

data.frame.

EcoSppDOMParameters

data.frame.

ForCSProportions

data.frame.

ANPPTimeSeries

data.frame.

MaxBiomassTimeSeries

data.frame.

EstablishProbabilities

data.frame.

RootDynamics

data.frame.

Methods

Public methods

Inherited methods

Method new()

Usage

ForCS$new(
  path,
  Timestep = 1,
  SeedingAlgorithm = NULL,
  ClimateFile = NULL,
  InitialCommunitiesFiles = NULL,
  DisturbanceMatrixFile = NULL,
  SnagFile = NULL,
  OutputTables = NULL,
  SoilSpinupControls = NULL,
  AvailableLightBiomass = NULL,
  LightEstablishmentTable = NULL,
  SpeciesParameters = NULL,
  DOMPools = NULL,
  EcoSppDOMParameters = NULL,
  ForCSProportions = NULL,
  ANPPTimeSeries = NULL,
  MaxBiomassTimeSeries = NULL,
  EstablishProbabilities = NULL,
  RootDynamics = NULL
)

Arguments

path

Character. Directory path.

Timestep

Integer.

SeedingAlgorithm

Character. Dispersal algorithm to use. One of "WardSeedDispersal", "NoDispersal", "UniversalDispersal".

ClimateFile

Character. Relative file path.

InitialCommunitiesFiles

Character. Relative file paths.

DisturbanceMatrixFile

Character. Relative file path.

SnagFile

(Optional) Character. Relative file path.

OutputTables

data.frame.

SoilSpinupControls

data.frame.

AvailableLightBiomass

data.frame.

LightEstablishmentTable

data.frame.

SpeciesParameters

data.frame.

DOMPools

data.frame.

EcoSppDOMParameters

data.frame.

ForCSProportions

data.frame.

ANPPTimeSeries

data.frame.

MaxBiomassTimeSeries

data.frame.

EstablishProbabilities

data.frame.

RootDynamics

data.frame.

Method write()

Write extension inputs to disk

Usage

ForCS$write()

Method clone()

The objects of this class are cloneable with this method.

Usage

ForCS$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

## See vignette for example usage